PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00090g00168.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family MYB_related
Protein Properties Length: 205aa    MW: 22894.6 Da    PI: 6.3931
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00090g00168.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.33.6e-181461148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              +g+WT+eEde+l +++k++G g+W+t ++  g+ R++k+c++rw +yl
  Peaxi162Scf00090g00168.1 14 KGAWTKEEDERLTKYIKEHGEGCWRTLPKAAGLLRCGKSCRLRWINYL 61
                              79******************************99************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.5E-24564IPR009057Homeodomain-like
PROSITE profilePS5129423.304965IPR017930Myb domain
SMARTSM007176.2E-141363IPR001005SANT/Myb domain
PfamPF002491.6E-151461IPR001005SANT/Myb domain
SuperFamilySSF466891.08E-221588IPR009057Homeodomain-like
CDDcd001673.50E-111661No hitNo description
PROSITE profilePS500905.23962110IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.604.7E-106588IPR009057Homeodomain-like
SMARTSM007170.266120IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MGRSPCCEKE HTNKGAWTKE EDERLTKYIK EHGEGCWRTL PKAAGLLRCG KSCRLRWINY  60
LRPDLKRGNF TEEEDELIIN LHSLLGNNST NLNKKITSTT AGASTTTSQC FQQLQAHSSG  120
TLLWTRSGLS DSIINNIFIS SMVKSDSAAE DSNSSSDLSE EMVHPHLNLE LSISLPQPLE  180
GKELRKEEQL FHEPSFTSAS SVTQP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-161310326115MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009393912.18e-62PREDICTED: myb-related protein Hv1-like
RefseqXP_015955773.17e-61PREDICTED: transcription repressor MYB6-like
SwissprotP813931e-57MYB08_ANTMA; Myb-related protein 308
TrEMBLB9RHN01e-67B9RHN0_RICCO; R2r3-myb transcription factor, putative
STRINGVIT_07s0130g00040.t013e-62(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.12e-56myb domain protein 4